PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539428.1_FGP006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 281aa    MW: 30701.8 Da    PI: 6.8078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539428.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09115175855
                        HHHHHHHHHHHHHHHHHCTSCC.C...............TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPk.as............kapskKlsKaeiLekAveYIksLq 55 
                         Er RR+++++ f++L  llPk +               ++   +Ka+i+ +A+ YIk L+
  KN539428.1_FGP006 115 TERERRKKMKNMFSTLHGLLPKiPGkvanaiekfyisLIYQDLTDKATIVGEAIGYIKTLE 175
                        7*********************555***********7777777***************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.144107174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-12110190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.42E-8112179No hitNo description
Gene3DG3DSA:4.10.280.101.2E-10112183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6115175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-4115180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSQEGADLSQ DVDESPDHTA VVTTNNLVRS IKAEKSNSSS SSGKPVETNI GLKVASPTVF  60
GFNTTIEGTG KNTAVKREEG EGDGRPGVNS GVSTRDTNGK GKNAMDMEQA LHIWTERERR  120
KKMKNMFSTL HGLLPKIPGK VANAIEKFYI SLIYQDLTDK ATIVGEAIGY IKTLEDVVQK  180
LETIKTERTW SAPNITLTMA GVDAFINMCL PRQRASFTTV AFVLEKHQID VVTSTISADH  240
DKSLFSVHVR LNEASLQSTE GLTPEAKYKL AVSELMVRLA E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653399.11e-128PREDICTED: transcription factor bHLH95-like
TrEMBLQ7XUT81e-115Q7XUT8_ORYSJ;
STRINGBGIOSGA016427-PA1e-114(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-18bHLH family protein